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January 2022

Version Control with Git

January 20, 2022 @ 9:00 am - 11:00 am
Zoom

Git is a software tool that helps users manage changes to their software over time. Git will allow you to maintain a complete change history of every file, create branches for concurrent streams of changes, trace changes with annotations, and collaborate and share work with others. This interactive introduction will demonstrate how to use Git to track changes, to explore history, and to use web-based Git repositories to share work with others and collaborate. Register in advance:  Please REGISTER using the…

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Machine Learning for Oceanic & Atmospheric Sciences

January 7, 2022 @ 10:00 am - 3:00 pm

IDRE ECR Group is excited to announce Machine learning for oceanic & atmospheric sciences workshop with the following details: Title: Machine Learning for Oceanic & Atmospheric Sciences Date and Time: Friday, January 7, 2022 @10 AM (PST) Video recordings: Session-1 (10AM-11:15 AM), Session-2 (11:30 AM - 12:40 PM), Session-3 (1:30 PM - 3 PM) Abstract: Machine learning (ML) denotes a host of computational methods for inferring meaningful patterns in data. Advances over recent decades in ML methodologies, computational power, and…

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November 2021

Common Data formats: How to Access Them Programmatically

November 29, 2021 @ 2:00 pm - 3:30 pm
Zoom

Storing data in an open-standard format ensures the data’s long-term readability and reusability, which is an important component of achieving reproducible computing. In this class we will explore a number of common data formats, learn about their structures and show how to access them programmatically. The data formats considered include: CSV (several variants), JSON, XML, Excel and HDF5. The Python and Julia languages will be used in the programming examples.

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Building a patient motion model for radiotherapy

November 19, 2021 @ 11:30 am - 12:30 pm
Zoom

Speaker: Ricky Savjani, Ph.D. IDRE Scholar, Department of Radiation Oncology, University of California Los Angeles   Time: 11:30 AM – 12:30 PM (PST) Date: Nov 19, 2021 Location: Zoom (RSVP here for the link)   Abstract: Several technological advances in radiotherapy have enabled the use of focused radiation to treat solid tumors within the thoracic cavity. Stereotactic Body Radiation Therapy (SBRT) offers a way to treat patients with high doses of radiation with just a few (three to five) treatments…

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Learning PyTorch

November 15, 2021 @ 10:00 am - 12:00 pm

The topic of this workshop session is PyTorch. We will give a general introduction on this popular deep learning framework, with practical illustrations on the basic usage of tensors and automatic differentiation, and on solving a simple temerature-conversion problem using PyTorch. The knowledge of topics covered in the previous session about machine/deep learning is assumed. Working experience of Python, Jupyter Notebooks will be helpful to follow the demos. Registration Link: https://ucla.zoom.us/meeting/register/tJwtf-CprzkvGNTkt_bZgImNtP1fl9XrfsNc

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Learning Deep Learning Mechanics

November 10, 2021 @ 10:00 am - 12:00 pm

This workshop is a descriptive introduction without Python or intensive math on what is deep learning and how to train a deep neural network. Our discussion will be arranged along a general procedure of working on a general deep learning project. Basic knowledge of calculus and linear algebra will be helpful to understand the details. Register link: https://ucla.zoom.us/meeting/register/tJEodeqoqTgvE9K335pG-MxnJtlTy7VQhvfz

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Introduction to SPSS

November 9, 2021 @ 1:00 pm - 4:00 pm

SPSS is a very easy-to-use statistical package that runs on Windows, Macintosh and UNIX platforms. This class is designed for people who are just starting to use SPSS. The students in the class will have a hands-on experience using SPSS for doing statistics, graphics, and data management. The class notes are the scripts for the class. The SPSS class notes do not contain any of the computer output. The class notes are not meant to be an SPSS textbook or…

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RESEARCH PUBLISHING AND REPRODUCIBILITY BROWN BAG

November 9, 2021 @ 12:00 pm - 1:30 pm
Zoom

Online Webinar (Registration Required) Click to register DGIT and the UCLA Library have come together to discuss reproducibility, data management and publishing strategies for biomedical researchers. Methods and protocols reporting is critical to ensuring reproducibility and facilitating collaboration in research. Join us for a discussion on the important considerations and strategies for managing research methods and protocols. Learn about tools provided by the UCLA library that can be used to support the management and sharing of research protocols. This session was…

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Deep Learning, the Good, the Bad and the Ugly

November 8, 2021 @ 10:00 am - 12:00 pm
Zoom

This workshop is a remake for the general introduction about deep learning in our previous "Learning Deep Learning with PyTorch" workshop series. In this talk, we will talk about the deep learning and neural network from a different perspective. After a very brief introduction on what machine learning and deep learning are, our discussion will be focused on what deep learning technology can (and cannot) bring to the academic research, including both the benefits and the challenges. No specific prerequisite knowledge is required.

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Using SQL with Python for Data Analysis

November 5, 2021 @ 9:00 am - 11:00 am
Zoom

SQL is a standard language designed to query and extract data from tables stored in a database. Python, on the other hand, has well-known libraries specially designed for data analysis and manipulation. This course will introduce attendees to the basics of how to integrate SQL and relational database management systems with Python for data analysis. Basic experience with SQL and Python will be useful. If you have questions regarding the workshop, please contact Ben Winjum. Registration required: https://ucla.zoom.us/meeting/register/tJYtdeysrjsvG9dgQw4kD2tUSm1VACQ8H4nD

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Job Scheduling on Hoffman2 Cluster

November 4, 2021 @ 2:00 pm - 4:00 pm
Zoom

This talk is about the practice of effectively running jobs on the Hoffman2 cluster. We will first review the model and policy of Hoffman2’s job scheduling, followed by how to use the job scheduler (software), Univa Grid Engine. A number of common use cases will be discussed in details, including: (1) Single-CPU jobs, (2) Multi-CPU, same-node jobs, (3) Multiple-node (MPI-style) jobs, (4) Job arrays and (5) High-priority jobs (on research groups' purchased nodes).

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Introduction to SAS

November 2, 2021 @ 1:00 pm - 4:00 pm

SAS is a powerful statistical package that runs on many platforms, including Windows and Unix. This class is designed for people who are just getting started using SAS. The students in the class will have a hands-on experience using SAS for statistics, graphics, and data management. The SAS class notes do not contain any of the computer output. The class notes are not meant to be a SAS textbook or a reference manual. However, it is possible for individuals to…

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October 2021

Panel discussion on Interdisciplinary Research and Collaboration

October 29, 2021 @ 11:30 am - 12:30 pm

  Click here for the video recording. The IDRE Early Career Researchers group is excited to restart its monthly meetings. This first meeting will introduce five  IDRE scholars selected from a large pool of applicants, followed by a panel discussion on interdisciplinary research and collaboration. The following eminent UCLA researchers will be the panelists: Karen McKinnon, Institute of the Environment and Sustainability, Department of Statistics Jacob Foster, Department of Sociology Miriam Marlier, Environmental Health Sciences Jim McWilliams, Department of Atmospheric…

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Introduction to SQL

October 29, 2021 @ 9:00 am - 12:00 pm
Zoom

SQL is a standard language designed to query and extract data from tables stored in a database. In this class, you will learn how to store, query, and manipulate data with SQL, and you will gain exposure to the fundamentals of SQL and relational database management systems. If you have questions regarding the workshop, please contact Ben Winjum. Registration required: https://ucla.zoom.us/meeting/register/tJEld-6qqD0oH9Zk7otQ0pP3ZnM3eUE_4dJV

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Introduction to Stata

October 26, 2021 @ 1:00 pm - 4:00 pm

Stata is a powerful and yet easy-to-use statistical package that runs on Windows, Macintosh and Unix platforms.  This class is designed for people who are just getting started using Stata.  The students in the class will have a hands-on experience using Stata for statistics, graphics and data management.  The class notes are the scripts for the class available to the students in the class and to others on the Internet.  The Stata class notes do not contain any of the…

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Docker Containerization: Practices

October 22, 2021 @ 10:00 am - 11:30 am
Zoom

Based on the idea of virtual machine which is an isolated virtual environment providing functionality needed to execute guest operation system and programs, containerization provides a mechanism where applications can be abstracted from the environment they originally run. These two workshops will describe the basic concepts and usage for one of the most popular containerization techniques, Docker.

Example topics included in the second part, Practices, are: network, Docker file, building image and container for different applications in practice, Docker management tools, and transferring Docker image from personal machine to cluster.

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Introduction to R

October 19, 2021 @ 1:00 pm - 4:00 pm

R is a powerful statistical package that runs on Windows, Macintosh and Unix platforms.  This class is designed for people who are just getting started using R.  The students in the class will have a hands-on experience using R for statistics, graphics and data management.  The class notes are the scripts for the class available to the students in the class and to others on the Internet.  The R class notes do not contain any of the output.  The class…

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Docker Containerization: Fundamentals

October 15, 2021 @ 10:00 am - 11:30 am
Zoom

Based on the idea of virtual machine which is an isolated virtual environment providing functionality needed to execute guest operation system and programs, containerization provides a mechanism where applications can be abstracted from the environment they originally run. These two workshops will describe the basic concepts and usage for one of the most popular containerization techniques, Docker.

Example topics included in the first part, Fundamentals, are: the idea between virtual machine and containerization, container structure, image and repository, management of container, and data volume.

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Getting Started with Comparing and Annotating Digital Images

October 14, 2021 @ 12:00 pm - 2:00 pm
Zoom

  Thursday, October 14, 2021 from 12-2pm   Scholarship of visual materials requires close looking and comparison across works. Digitization efforts across the world have allowed for many digital facsimiles of these materials to be made available online. For scholarship, digital viewers are extremely valuable to presenting high-resolution imaging, which allows for close examination of materials. Interoperability has become crucial for institutions for contrasting objects from different collections. Increasing stability in digital visual scholarship means working from authority files from…

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Getting Started with GIS and Spatial Research

October 13, 2021 @ 9:00 am - 11:00 am
Zoom

Register in advance for this meeting: https://ucla.zoom.us/meeting/register/tJYkdeqsrD0rHdN887_PHQZXbUHsIk4PoYal After registering, you will receive a confirmation email containing information about joining the meeting. As members of an academic community with a myriad of research initiatives, the need to map information, to spatially analyze, to geoprocess, and to visualize space and time is becoming ubiquitous. But how do you get started? The answer to this question largely depends on what you want to map, and how you want to create your map. The…

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RESEARCH PUBLISHING AND REPRODUCIBILITY BROWN BAG

October 12, 2021 @ 12:00 pm - 1:00 pm
Zoom

Online Webinar (Registration Required) Click to register DGIT and the UCLA Library have come together to discuss reproducibility, data management and publishing strategies for biomedical researchers. Funders and publishers around the world are exploring data transparency and methods reporting requirements as conditions of their funding or use. In response to this, the UCLA Library has invested in various resources and tools for UCLA researchers to safely archive and curate research data associated with their publications. Join us to discuss strategies…

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August 2021

Generalized Linear Models in R

August 30, 2021 @ 1:00 pm - 4:00 pm

This workshop is designed to give an overview on generalized linear models. The workshop introduces the basic theory of generalized linear models and their implementation in R. We will talk about a broad range of regression models such as Logistic regression, Poisson regression, negative binomial, zero-inflated Poisson, and zero-inflated negative binomial and how to run them in R and how to interpret the results. Of course, we will not be able to discuss all aspects of generalize regression models such…

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Statistical Writing

August 23, 2021 @ 1:00 pm - 4:00 pm

Description:  This workshop will cover general advice on writing papers for publication. The notes for the workshop are here:  https://stats.idre.ucla.edu/other/mult-pkg/seminars/statistical-writing/ . Please register to obtain Zoom link:  https://ucla.zoom.us/meeting/register/tJcvcuivrjgtHtydB8qNmLT2Q5s79fPrezz4 After registering, you will receive a confirmation email containing information about joining the meeting.

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Intermediate Topics in Confirmatory Factor Analysis (CFA)

August 16, 2021 @ 1:00 pm - 4:00 pm
Zoom

This seminar is a continuation of the first seminar on Confirmatory Factor Analysis (CFA) in R with lavaan. Topics include multiple group CFA measurement invariance latent growth modeling Some time will be given at the end for interactive coding exercises. Instructor: Johnny Lin, Ph.D., OARC/IDRE Statistical Consulting Time: Aug 16, 2021 01:00 PM Pacific Time (US and Canada) Pre-requisites: Attendance or self-learning of first seminar Confirmatory Factor Analysis (CFA) in R with lavaan REGISTER to obtain Zoom link https://ucla.zoom.us/meeting/register/tJEqfumgqDsjEt1S9ROTo3zdJ9qWjNXvT5Ez After…

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Workflow automation with continuous integration and deployment (CI/CD)

August 9, 2021 @ 2:00 pm - 4:00 pm
Zoom
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Introduction to the Linux Shell: Shell Scripting

August 6, 2021 @ 9:00 am - 11:00 am
Zoom
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July 2021

Introduction to the Linux Shell: Using the Command Line

July 30, 2021 @ 9:00 am - 11:00 am
Zoom
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Data Visualization from Matlab to Python/Matplotlib

July 15, 2021 @ 10:00 am - 12:00 pm
Zoom
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Introduction to Open Source Web GIS with Leaflet

July 14, 2021 @ 9:00 am - 11:00 am
Zoom

Research projects are often confronted with the need to publish results to communicate their findings to the general audience. Publishing research on an interactive web-based map is an effective and visually compelling way to do so. In this workshop, participants will learn the basics of HTML, CSS and Javascript. We will use the Leaflet library to overlay research data and create compelling narrative maps. Finally, participants will learn how to use GitHub Pages as a publishing platform for the interactive…

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June 2021

Introduction to Augmented Reality with Artivive

June 29, 2021 @ 2:00 pm - 4:00 pm
Zoom
hand holding mobile phone demonstrating AR

Augmented reality (AR) is the layering of computer-generated perceptual information onto real environments. The experience requires a level of interactivity and sensory engagement. AR is being adopted across the fields of architecture and engineering, as well as adopted by artists to make creative connections between our shared reality and that of innumerable virtual worlds. This workshop will introduce participants to the design and mechanics of augmented reality. We will focus on working with images, bringing digital objects into live environments…

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High Performance Machine Learning Using Scikit-Learn

June 25, 2021 @ 10:00 am - 12:00 pm
Zoom

As machine learning gains more and more popularity in science and technology in recent years, scikit-learn becomes one of the must-have libraries in the general machine learning toolbox. In this lecture we will discuss some advanced topic on using scikit-learn python library to make high performance machine learning, specifically the speedup modeling using multicore and accelerators and out-of-core learning. The session assumes the knowledge of topics covered in the first session. Working experience on Python programming, basic machine learning concepts and Scikit-learn will be helpful.

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Learning Scikit-Learn: the basics

June 23, 2021 @ 10:00 am - 12:00 pm
Zoom

As machine learning gains more and more popularity in science and technology in recent years, scikit-learn becomes one of the must-have libraries in the general machine learning toolbox. In this lecture we will present an introduction about the basics of scikit-learn python library. Prerequisite knowledge for the workshop includes Python programming and basic machine learning concepts.

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May 2021

Applied Survey Data Analysis in Stata

May 24, 2021 @ 1:00 pm - 4:00 pm
Zoom

Zoom registration required:  https://ucla.zoom.us/meeting/register/tJUrcO2qpjopHdZ1iMHcg9ksIr0czZ3ixKiL This workshop will discuss the following topics: • how complex survey data are different from other types of data • how to do to basic descriptive statistics with continuous and categorical variables • how to make descriptive graphs with complex survey data • how to run a variety of regression models, including linear, binary logistic, ordinal logistic, multinomial logistic and count regression models with complex survey data, including how to graph interactions in such models •…

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Running Applications on the Hoffman2 Cluster: Case Studies (Part III)

May 24, 2021 @ 10:00 am - 12:00 pm
Zoom

** THIS WORKSHOP IS BEING RESCHEDULED TO MAY 24, 2021 ** The Hoffman2 Cluster is a powerful computational resource for the UCLA research community. This workshop is part III of a three-seminar series designed to introduce users to the Hoffman2 Cluster environment and to clarify the process of porting applications or using applications already available on the cluster. It also addresses how to port your workflow to the cluster and how to submit batch and run interactive applications. More Case…

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Introduction to Virtual Machines and Containers

May 20, 2021 @ 10:00 am - 12:00 pm
Zoom

A virtual machine is an isolated operating system environment running on top of the host computer’s original operating system. This hypervisor-based technology enables us to run one or multiple operating systems on the same host computer (e.g. a Linux virtual machine on top of a Windows host computer). However, a virtual machine can be resource-heavy to the host computer. In recent years, the container technology has emerged as a lightweight alternative to the virtual machine, also providing an isolated software…

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Data Visualization with Julia

May 17, 2021 @ 2:00 pm - 4:00 pm
Zoom

The Julia language has a unified interface to its plotting functionalities, supported by multiple backends such as plotly and pyplot (matplotlib). We will cover the fundamentals of Julia's plotting capability, and show the process of creating data visualization from select examples, including interactive and animated plots. Registration required.

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Confirmatory Factor Analysis (CFA) in R with lavaan

May 17, 2021 @ 1:00 pm - 4:00 pm
Zoom

Zoom registration required: https://ucla.zoom.us/meeting/register/tJwkcuiqrjovGdFdq0u6EebmpiiX_KW00ohH This workshop will cover basic concepts of confirmatory factor analysis by introducing the CFA model and looking at examples of a one-factor, two-factor and second-order CFA. Concepts such as model identification, standardized solutions, and model fit statistics such as the chi-square statistic, CFI, TLI and RMSEA will be covered. The focus is on learning the CFA model and how to implement and interpret the output in R’s lavaan package.

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Running Applications on the Hoffman2 Cluster: Case Studies (Part II)

May 17, 2021 @ 10:00 am - 12:00 pm
Zoom

** THIS WORKSHOP IS BEING RESCHEDULED TO MAY 17, 2021 ** The Hoffman2 Cluster is a powerful computational resource for the UCLA research community. This workshop is part II of a three-seminar series designed to introduce users to the Hoffman2 Cluster environment and to clarify the process of porting applications or using applications already available on the cluster. It also addresses how to port your workflow to the cluster and how to submit batch and run interactive applications. Case Studies…

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High-Performance Data Science in Python (2) DataFrame Game

May 12, 2021 @ 10:00 am - 12:00 pm
Zoom

This workshop series will present an extensive discussion on how to improve the performance of Python in data science by looking under the hood of its language/libraries and using the technologies to make Python a practical solution for the high-performance big data analytics. In the second session, we will focus on how to load/process the super big dataset in Python using a single machine and comparing the dataframe implementations from Pandas, Modin, Pandarallel, Dask and Vaex etc. Although no specific prerequisite is required to attend the talk, having programming experience in Python's numpy and Pandas packages will be helpful to fully understand the lecture content.

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Introduction to Regression in R

May 10, 2021 @ 1:00 pm - 4:00 pm
Zoom

Zoom registration required: https://ucla.zoom.us/meeting/register/tJAocumvrTkoHdVjqIGxWTdErUZLo_Z5hccE Regression analysis is one of the most powerful statistical techniques that is used to explain variability in a response (dependent) variable as a function of one or more predictor (explanatory or independent) variables. The aim of this seminar is to help participants increase their skills in using regression analysis with R. The seminar begins with simple regression and generalizes the methods to multiple regression, followed by regression diagnostics. The seminar briefly reviews regression concepts as necessary,…

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Running Applications on the Hoffman2 Cluster: Intro (Part I)

May 10, 2021 @ 10:00 am - 12:00 pm
Zoom

** THIS WORKSHOP IS BEING RESCHEDULED TO MAY 10, 2021 ** The Hoffman2 Cluster is a powerful computational resource for the UCLA research community. This workshop is part I of a three-seminar series designed to introduce users to the Hoffman2 Cluster environment and to clarify the process of porting applications or using applications already available on the cluster. It also addresses how to port your workflow to the cluster and how to submit batch and run interactive applications. This introductory…

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High-Performance Data Science in Python (1) Interpreter War

May 5, 2021 @ 10:00 am - 12:00 pm
Zoom

This workshop series will present an extensive discussion on how to improve the performance of Python in data science by looking under the hood of its language/libraries and using the technologies to make Python a practical solution for the high-performance big data analytics. In the first session, we will focus on how to boost the speed of python code in an interperter level by explaining the concepts (e.g. GIL, GIT) and introducing the packages of pypy, numba, pythran, cython etc. Although no specific prerequisite is required to attend the talk, having programming experience in Python will be helpful to fully understand the lecture content.

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Package Management in Julia

May 3, 2021 @ 2:00 pm - 4:00 pm
Zoom

The Julia language has a rich and fast-growing ecosystem in the form of open-source packages. We will cover the fundamentals of Julia's package management system, using either via the REPL (interactive command prompt) or the Pkg package, and show how to manage multiple sets of packages in the user environment. We will also discuss how to organize your Julia code into a package and share with others. Registration required.

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R Graphics: Introduction to ggplot2

May 3, 2021 @ 1:00 pm - 4:00 pm
Zoom

Zoom registration required: https://ucla.zoom.us/meeting/register/tJAucO-orzkvHtGtJFXfN76vvx75TY-1QxIG This seminar teaches the “grammar” of graphics that underlies the ggplot2 package, allowing the user to build eye-catching, publication-quality graphics layer-by-layer. We cover the basic elements of the grammar of graphics, including aesthetics, geoms, scales, and themes, and we will show you how easy ggplot2 makes it to integrate these elements to make informative and beautiful graphics. The seminar is meant to be interactive with attendees participating in the coding, so some very basic R coding…

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April 2021

Singularity on Hoffman2: Using containers on HPC resources

April 29, 2021 @ 10:00 am - 11:00 am
Zoom

Singularity is a free, cross-platform and open-source software that can run Operating System Virtualization also known as Containerization. This type of virtualization allows you to run an Operating System within a host Operating System. Hoffman2 has the ability to run containerized software with singularity. This presentation will demonstrate using Singularity on Hoffman2. This presentation will also go over several examples of running containers on Hoffman2 and creating containers to run custom user applications. If you have any further questions regarding…

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Data Visualization with Python II: Making Interactive Plots and Widgets

April 23, 2021 @ 9:00 am - 11:00 am
Zoom

Python is a very popular language for computational and data science, and it has many powerful capabilities for visualizing data.  Data visualization plays an essential role in representing data so that its underlying patterns might be conveyed and understood.  The second part of this series will explore various ways that Python can be used to make interactive graphics for exploring data and conceptualizing trends and dependencies.  We'll dive into Python libraries for making interactive widgets, plots, and dashboards (ipywidgets, bqplot, voila,…

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Introduction to Spatial Statistics with Python

April 21, 2021 @ 9:00 am - 11:00 am
Zoom

Registration link: https://ucla.zoom.us/meeting/register/tJwkdu6hqj4sG9ZioB0tM8VuXxA44AWGc6W- Visual interpretations are meaningful ways to determine spatial trends in our data. However, underlying factors—such as inconsistent geographies, scale, data gaps, overlapping data—have the potential to produce incorrect assumptions, as valuable information may be conveniently hidden from the visual output. One way to address this issue is to amend your visual output with geo-statistical validation. In this workshop, we will use Python to look at one such approach: Spatial Autocorrelation. Spatial autocorrelation addresses the so-called "First Law…

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Data Visualization with Python I: Plotting Fundamentals

April 16, 2021 @ 9:00 am - 11:00 am
Zoom

Python is a very popular language for computational and data science, and it has many powerful capabilities for visualizing data.  Data visualization plays an essential role in representing data so that its underlying patterns might be conveyed and understood.  The first part of this series will showcase various ways that Python can be used for creating graphics, following which we'll dive into some common Python libraries for data viz:  Matplotlib, Pandas, and Seaborn.  We will go through several interactive exercises…

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March 2021

Multiple Imputation in R

March 8, 2021 @ 1:00 pm - 4:00 pm
Zoom
Free

Please REGISTER in advance here. Workshop will be conducted in Zoom in PST time. Invites are sent out the day before the workshop.   The purpose of this workshop is to discuss commonly used techniques for handling missing data and common issues that could arise when these techniques are used. In particular, we will focus on the one of the most popular methods, multiple imputation, and how to perform it using the package mice in R. We will also briefly…

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Introduction to Photogrammetry and Mobile LiDAR Scanning

March 2, 2021 @ 2:00 pm - 4:00 pm
Zoom
Free

Please REGISTER in advance here. Workshop will be conducted in Zoom in PST time. Invites are sent out the day before the workshop.   3D models can be formed in a number of ways. Two common surveying methods that result in 3D models are photogrammetry and light detection and ranging or lidar for short. A form of photogrammetry has been around since the beginnings of photography in the mid-19th century. The term usually refers to the method by which 2D…

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